Biomedical Databases Parsers

cancerGenomeInterpreterParser.py

corumParser.py

parser(databases_directory, download=True)[source]

disgenetParser.py

parser(databases_directory, download=True)[source]
readDisGeNetProteinMapping(config, directory)[source]
readDisGeNetDiseaseMapping(config, directory)[source]

drugBankParser.py

drugGeneInteractionDBParser.py

exposomeParser.py

foodbParser.py

goaParser.py

gwasCatalogParser.py

parser(databases_directory, download=True)[source]

hgncParser.py

parser(databases_directory, download=True)[source]

hmdbParser.py

hpaParser.py

intactParser.py

parser(databases_directory, download=True)[source]

jensenlabParser.py

mutationDsParser.py

parser(databases_directory, download=True)[source]

oncokbParser.py

pathwayCommonsParser.py

parser(databases_directory, download=True)[source]

pfamParser.py

pspParser.py

reactomeParser.py

refseqParser.py

parser(databases_directory, download=True)[source]

siderParser.py

signorParser.py

parser(databases_directory, download=True)[source]
parse_substrates(filename, modifications, accronyms, amino_acids)[source]

smpdbParser.py

parser(databases_directory, download=True)[source]
parsePathways(config, fhandler)[source]
parsePathwayProteinRelationships(fhandler)[source]
parsePathwayMetaboliteDrugRelationships(fhandler)[source]

stringParser.py

textminingParser.py

uniprotParser.py