ClinicalKnowledgeGraph
latest
  • Clinical Knowledge Graph

Requirements

  • System Requirements

Installation

  • Installation
  • CKG Docker Container
  • Installing Neo4j
  • Installing CKG python library
  • Create a new user in the graph database

Getting started

  • Getting Started with CKG
  • Connecting to the Clinical Knowledge Graph database
  • Define data analysis parameters
  • Report notifications

CKG Graph Database Builder

  • Building CKG’s Graph Database
  • Adding New Resources

Project Report

  • CKG Project Report

Jupyter Notebooks

  • The Clinical Knowledge Graph Notebooks

More

  • Clinical Knowledge Graph Statistics: Imports
  • Retrieving data from the Clinical Knowledge Graph database

API docs

  • API Reference
    • Graph Database Connector (graphdb_connector)
    • Graph Database Builder (graphdb_builder)
      • Ontology Databases
        • Ontologies Parsers
        • ontologies_controller.py
      • Biomedical Databases
      • Experimental Data
      • User Creation
      • CKG Builder
      • builder_utils.py
      • mapping.py
    • Report Manager (report_manager)
    • Analytics Core (analytics_core)
    • Notebooks - development
    • ckg_utils.py

About

  • Credits
  • Backers
  • Contributing
  • History
  • Code of Conduct
ClinicalKnowledgeGraph
  • »
  • API Reference »
  • Graph Database Builder (graphdb_builder) »
  • Ontology Databases
  • Edit on GitHub

Ontology Databases¶

  • Ontologies Parsers
    • efoParser.py
    • icdParser.py
    • oboParser.py
    • reflectParser.py
    • snomedParser.py

ontologies_controller.py¶

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© Copyright 2019, Alberto Santos, Ana Rita Colaço, Annelaura B. Nielsen. Revision 6854c986.

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