ClinicalKnowledgeGraph
latest
  • Clinical Knowledge Graph

Requirements

  • System Requirements

Installation

  • Installation
  • CKG Docker Container
  • Installing Neo4j
  • Installing CKG python library
  • Create a new user in the graph database

Getting started

  • Getting Started with CKG
  • Connecting to the Clinical Knowledge Graph database
  • Define data analysis parameters
  • Report notifications

CKG Graph Database Builder

  • Building CKG’s Graph Database
  • Adding New Resources

Project Report

  • CKG Project Report

Jupyter Notebooks

  • The Clinical Knowledge Graph Notebooks

More

  • Clinical Knowledge Graph Statistics: Imports
  • Retrieving data from the Clinical Knowledge Graph database

API docs

  • API Reference

About

  • Credits
  • Backers
  • Contributing
  • History
  • Code of Conduct
ClinicalKnowledgeGraph
  • »
  • Overview: module code

All modules for which code is available

  • ckg.analytics_core.R_wrapper
  • ckg.analytics_core.analytics.kaplan_meierAnalysis
  • ckg.analytics_core.analytics.wgcnaAnalysis
  • ckg.analytics_core.utils
  • ckg.analytics_core.viz.Dendrogram
  • ckg.analytics_core.viz.color_list
  • ckg.analytics_core.viz.wgcnaFigures
  • ckg.ckg_utils
  • ckg.graphdb_builder.builder_utils
  • ckg.graphdb_builder.databases.parsers.corumParser
  • ckg.graphdb_builder.databases.parsers.disgenetParser
  • ckg.graphdb_builder.databases.parsers.gwasCatalogParser
  • ckg.graphdb_builder.databases.parsers.hgncParser
  • ckg.graphdb_builder.databases.parsers.intactParser
  • ckg.graphdb_builder.databases.parsers.mutationDsParser
  • ckg.graphdb_builder.databases.parsers.pathwayCommonsParser
  • ckg.graphdb_builder.databases.parsers.refseqParser
  • ckg.graphdb_builder.databases.parsers.signorParser
  • ckg.graphdb_builder.databases.parsers.smpdbParser
  • ckg.graphdb_builder.experiments.parsers.clinicalParser
  • ckg.graphdb_builder.experiments.parsers.wesParser
  • ckg.graphdb_builder.ontologies.parsers.efoParser
  • ckg.graphdb_builder.ontologies.parsers.icdParser
  • ckg.graphdb_builder.ontologies.parsers.oboParser
  • ckg.graphdb_builder.ontologies.parsers.reflectParser
  • ckg.graphdb_builder.ontologies.parsers.snomedParser
  • ckg.graphdb_connector.connector
  • ckg.graphdb_connector.query_utils
  • ckg.report_manager.apps.basicApp
  • ckg.report_manager.apps.dataUploadApp
  • ckg.report_manager.apps.loginApp
  • ckg.report_manager.apps.projectCreationApp
  • ckg.report_manager.utils

© Copyright 2019, Alberto Santos, Ana Rita Colaço, Annelaura B. Nielsen. Revision 6854c986.

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